Publications

Also available on Google Scholar

2022

  • Ernst C, Duc J, Trono D
    Efficient and sensitive profiling of RNA-protein interactions using TLC-CLIP.
    bioRxiv 488168 (2022)
    bioRxiv | Twitter
  • Li H*, Ernst C*, Kolonko-Adamska M*, Greb-Markiewicz B*, Man J, Parissi V, Ng WL
    Phase separation in viral infections
    Trends in Microbiology In Press
    Journal

2020

  • Stojic L, Lun ATL*, Mascalchi P*, Ernst C, Redmond AM, Mangai J, Barr AR, Bousgouni V, Bakal C, Marioni JM, Odom DT, Gergely F
    A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division.
    Nature Communications 11: 1-21 (2020)
    Pubmed | Journal

2019

  • Ernst C*, Eling N*, Martinez-Jimenez CP, Marioni JC, Odom DT
    Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis.
    Nature Communications 10: 1251 (2019)
    Pubmed | Journal | Twitter | Github | Shiny App

2018

  • Dixon J*, Xu J*, Dileep V*, Zhan Y*, Song F*, Le VT, Yardimci GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison R, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F.
    Integrative detection and analysis of structural variation in cancer genomes.
    Nature Genetics 50: 1388-1398 (2018)
    Pubmed | Journal
  • Lowe R*, Barton C*, Jenkins CA, Ernst C, Forman O, Fernandez‐Twinn DS, Bock C, Rossiter SJ, Faulkes CG, Ozanne SE, Walter L, Odom DT, Mellersh C, Rakyan V.
    Ageing‐associated DNA methylation dynamics are a molecular readout of lifespan variation among mammalian species.
    Genome Biology 19: 22 (2018)
    Pubmed | Journal

2017

  • Ernst C, Odom DT, Kutter C.
    The emergence of piRNAs against transposon invasion to preserve mammalian genome integrity.
    Nature Communications 8: 1411 (2017)
    Pubmed | Journal

2016

  • Ernst C, Pike J, Aitken SJ, Long HK, Eling N, Stojic L, Ward MC, Connor F, Rayner TF, Lukk M, Kutter C, Odom DT.
    Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis.
    eLife 5: e20235 (2016)
    Pubmed | Journal
  • Goeppert B*, Ernst C*, Baer C, Roessler S, Renner M, Mehrabi A, Hafezi M, Pathil A, Warth A, Stenzinger A, Weichert W, Bähr M, Will R, Schirmacher P, Plass C, Weichenhan D.
    Cadherin‐6 is a putative tumor suppressor and target of epigenetically dysregulated miR‐429 in cholangiocarcinoma.
    Epigenetics 11: 780‐790 (2016)
    Pubmed | Journal

2015

  • Vietri Rudan M, Barrington C, Henderson S, Ernst C, Odom DT, Tanay A, Hadjur S.
    Comparative Hi‐C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture.
    Cell Reports 10: 1297‐1309 (2015)
    Pubmed | Journal

2014

  • Goeppert B, Konermann C, Schmidt CR, Bogatyrova O, Geiselhart L, Ernst C, Gu L, Becker N, Zucknick M, Mehrabi A, Hafezi M, Klauschen F, Stenzinger A, Warth A, Breuhahn K, Renner M, Weichert W, Schirmacher P, Plass C, Weichenhan D.
    Global alterations of DNA methylation in cholangiocarcinoma target the Wnt signaling pathway.
    Hepatology 59: 544‐554 (2014)
    Pubmed | Journal